Table 1 Antimicrobial resistance genes, plasmids and insertion sequences co-located on the same contigs
From: What lies beneath: microbial quality of rural groundwater explored by shotgun metagenomics
Pump | Contig name | ARG (Antibiotic class) | Plasmid | Insertion sequence |
|---|---|---|---|---|
Pump 1 | k141_509352 | aadA11(Aminoglycoside) | ✔ | IS91 |
k141_664048 | tet(C) (Tetracycline) | ✔ | IS3 | |
k141_453077 | lnu(A) (Lincosamide) | ✔ |  | |
k141_601605 | aph(6)-Id (Aminoglycoside) | ✔ |  | |
k141_904701 | lnu(D) (Lincosamide) | ✔ |  | |
k141_95316 | lnu(C) (Lincosamide) | ✔ |  | |
k141_268955 | mef(B) (Macrolide) | Â | IS21 | |
k141_561264 | sul2 (Sulfonamide) | Â | IS91 | |
k141_854039 | blaOXA−20 (Beta-lactam) |  | IS110 | |
Pump 2 | k141_146179 | lnu(A) (Lincosamide) | ✔ |  |
k141_285742 | aac(3)-II (Aminoglycoside) | ✔ |  | |
k141_395895 | aph(6)-Id, aph(3’’)-Ib (Aminoglycoside) | ✔ |  | |
k141_496773 | blaOXA−58 (Beta-lactam) | ✔ |  | |
k141_651786 | mph(E) (Macrolide) | ✔ |  | |
k141_811248 | str (Aminoglycoside) | ✔ |  | |
Pump 3 | k141_749373 | blaRSD2−2 (Beta-lactam) | ✔ | IS256 |
k141_267267 | aph(6)-Id (Aminoglycoside) | ✔ |  |